Skip to content
@elsa-data

Elsa Data

Genomic data sharing software ("let the data go")
README.md

Elsa Data is a software stack that provides data custodians and researchers with a collaborative space in which they can manage the sharing and access to genomic data sets.

Elsa Data can ingest approved applications from a variety of sources (REMS, RedCap, manual) and then creates a shared "release" - a specific web portal area documenting the details of exactly what data is being shared with exactly which users and under what circumstances. Elsa Data then enables point and click mechanics to actually release the genomic objects (object signing, copy out, access points). All of this sharing activity is strongly audited.

Elsa Data is distributed as a configurable Docker image (see releases). We also provide repositories demonstrating the deployment of a complete Elsa Data suite (software + database) in both AWS and Google Cloud.

📷 Screenshot

screenshot

🖊 Authors

  • Andrew Patterson (andrew@patto.net)
  • Christian Nassif-Haynes
  • William Intan
  • Marko Malenic

🌈 Contribution guidelines

Elsa Data is still work in progress - so we have no formal contribution guidelines yet. Contact the authors I guess!

💰 Funding

The development of Elsa Data was funded by Australian Genomics and the National Health and Medical Research Council (Grant GNT2000001).

Pinned

  1. elsa-data elsa-data Public

    Genomic data sharing support software ("let the data go")

    TypeScript 6 1

  2. aws-command-cli aws-command-cli Public

    A CLI tool for issuing administration commands to an Elsa Data instance

    Go

  3. aws-application aws-application Public

    A CDK project for deploying Elsa Data in AWS

    TypeScript

  4. aws-infrastructure aws-infrastructure Public

    A CDK project of stable AWS base infrastructure that is needed for the Elsa Data application (VPC, database etc)

    TypeScript

Repositories

Showing 10 of 14 repositories
  • htsget-elsa-rs Public

    A htsget-rs lambda function for interacting with Elsa

    Rust 0 MIT 0 0 3 Updated Apr 19, 2024
  • phenopacket-first-dataset-loader Public

    A definition of a dataset directory structure that uses Phenopacket files as the primary index

    JavaScript 0 MIT 0 0 0 Updated Apr 4, 2024
  • elsa-data Public

    Genomic data sharing support software ("let the data go")

    TypeScript 6 MIT 1 48 7 Updated Apr 3, 2024
  • aws-data-buckets Public

    A CDK stack showing the correct creation of buckets and cloud trails for storing genomic data

    TypeScript 0 MIT 0 0 0 Updated Mar 7, 2024
  • .github Public
    0 0 1 0 Updated Mar 6, 2024
  • aws-infrastructure Public

    A CDK project of stable AWS base infrastructure that is needed for the Elsa Data application (VPC, database etc)

    TypeScript 0 MIT 0 1 0 Updated Dec 21, 2023
  • aws-copy-out-sharer Public

    A CDK package for a Copy Out sharer - allowing bulk copying of objects to other buckets

    TypeScript 0 MIT 0 7 1 Updated Dec 5, 2023
  • aws-command-cli Public

    A CLI tool for issuing administration commands to an Elsa Data instance

    Go 0 MIT 0 0 0 Updated Nov 1, 2023
  • aws-application Public

    A CDK project for deploying Elsa Data in AWS

    TypeScript 0 MIT 0 1 0 Updated Nov 1, 2023
  • summy-nf Public

    Nextflow example code for demonstration - computes different types of checksums of files

    Nextflow 0 MIT 0 0 0 Updated Oct 10, 2023
View all repositories

Top languages

Loading…

Most used topics

Loading…