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[Target Identification] Generate bibliography summary #889

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mzueva opened this issue Jul 6, 2023 · 1 comment
Closed

[Target Identification] Generate bibliography summary #889

mzueva opened this issue Jul 6, 2023 · 1 comment
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@mzueva @AlfiyaRF
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kind/enhancement New feature or request

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@mzueva
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mzueva commented Jul 6, 2023

Background
It would be useful to generate a short summary over target related bibliography using LLM such as ChatGPT or PALM.

Approach
Let's add to the Bibliography section described in #839 a drop down menu with selection of supported LLMs (at the moment supported models are ChatGPT 3.5 (OPENAI_GPT_35) and ChatGPT 4.0 (OPENAI_GPT_40). When user selects a model a short summary over the articles in the bibliography shall be generated and shown above the list of articles.
@mzueva mzueva added the kind/enhancement New feature or request label Jul 6, 2023
mzueva added a commit that referenced this issue Jul 6, 2023
@mzueva
Issue #889 generate arcticle summary
c8d5ecd
@mzueva mzueva mentioned this issue Jul 6, 2023
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mzueva added a commit that referenced this issue Jul 6, 2023
@mzueva
Issue #889 generate arcticle summary (#890)
a2bc9e7
rodichenko pushed a commit that referenced this issue Jul 10, 2023
@AlfiyaRF
GUI target identification bibliography #889 (#892)
de50d86 
* added publications to bibliography panel

* added summary generation

* added pagination
This was referenced Jul 10, 2023
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@maryvictol
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@mzueva
Bug:
For some targets Generate summary with Google PaLM2 gives error com.google.gson.stream.MalformedJsonException: Unterminated object at line 4 column 375 path $.prompt
To reproduce:
Target BRCA1, Interest: brca1 (Homo_sapiens), Translational: brca1 (Homo_sapiens)

NShaforostov added a commit that referenced this issue Nov 22, 2023
@NShaforostov
(Issues #889, #986, #1028, #1031, #1037) Docs were added/updated
81215ef
@NShaforostov NShaforostov mentioned this issue Nov 22, 2023
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mzueva pushed a commit that referenced this issue Mar 26, 2024
@NShaforostov
Docs and Release Notes 2.8 update (#985)
aa3edd7 
* (Issue #959) 'Disease search from Target Identification panel' doc was added

* (Issue #839) Comparative genomics block description was added to the Target Identification doc

* (Issues #889, #986, #1028, #1031, #1037) Docs were added/updated

* (Issues #946, #1059) Docs about patents search and ad-hoc target identification were added
@mzueva mzueva closed this as completed Jul 31, 2024
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@mzueva @AlfiyaRF @maryvictol