Guides

Human Population and Evolutionary Genomics Lab | LANGEBIO

About

This is a collection of guides for various tasks in bioinformatics for Population Genomics with no accompanying scripts nor files.

Index

General

• pongGuide: How to prepare data for pong and plot the results.
• TreeMix: How to use TreeMix.

Data Format Conversions

• beagle3xVCF: How to convert Beagle3 files to VCF and re-phase them.
• VCF2PLINK: How to convert VCF to useable PLINK filesets.