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cnvkit scatter -Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure. #805

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EllenMarieS opened this issue Mar 23, 2023 · 0 comments
Open

cnvkit scatter -Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure. #805

EllenMarieS opened this issue Mar 23, 2023 · 0 comments

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@EllenMarieS
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Input: python cnvkit.py scatter -s S1.cn{s,r}

Output: anaconda3/envs/cnvkit/lib/python3.10/site-packages/cnvlib/commands.py:1479: UserWarning: Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
pyplot.show()

I tried installing pyqt5 and tk, neither solved the issue. Any recommendations would be greatly appreciated!

Thanks!
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@EllenMarieS