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evotools

Tools to support the study of genome and epigenome evolution and their relevance to disease.

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  1. nf-LO nf-LO Public

    A Nextflow workflow to generate lift over files for any pair of genomes

    Nextflow 54 10

  2. hapbin hapbin Public

    Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

    C++ 41 17

  3. CattleGraphGenomePaper CattleGraphGenomePaper Public

    Set of script for the paper on the cattle graph genome

    Shell 13 1

  4. wBuffaloVsCow wBuffaloVsCow Public

    Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"

    R 2 1

  5. nSPECTRa nSPECTRa Public

    Nextflow workflow to compute the mutation spectra

    Nextflow 2

  6. CattleOManalyses CattleOManalyses Public

    Script and some results from the Optical mapping SV analyses

    Shell 1

Repositories

Showing 10 of 10 repositories
  • nSPECTRa Public

    Nextflow workflow to compute the mutation spectra

    evotools/nSPECTRa’s past year of commit activity
    Nextflow 2 MIT 0 0 1 Updated Oct 27, 2024
  • nf-VarAnno Public

    A cross-species variant annotation pipeline based on Nextflow

    evotools/nf-VarAnno’s past year of commit activity
    Nextflow 0 0 0 0 Updated Sep 8, 2024
  • nf-LO Public

    A Nextflow workflow to generate lift over files for any pair of genomes

    evotools/nf-LO’s past year of commit activity
    Nextflow 54 MIT 10 0 1 Updated Sep 7, 2024
  • CattleGraphGenomePaper Public

    Set of script for the paper on the cattle graph genome

    evotools/CattleGraphGenomePaper’s past year of commit activity
    Shell 13 1 0 0 Updated Jan 10, 2023
  • GCRF_tutorial Public

    Material for the bioinformatics tutorial held in Tanzania in May 2022

    evotools/GCRF_tutorial’s past year of commit activity
    HTML 0 0 0 0 Updated May 24, 2022
  • CattleOManalyses Public

    Script and some results from the Optical mapping SV analyses

    evotools/CattleOManalyses’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated May 2, 2022
  • wBuffaloVsCow Public

    Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"

    evotools/wBuffaloVsCow’s past year of commit activity
    R 2 GPL-3.0 1 0 0 Updated Aug 21, 2020
  • hapbin Public

    Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

    evotools/hapbin’s past year of commit activity
    C++ 41 GPL-3.0 17 15 2 Updated Oct 24, 2019
  • hapbinX Public

    Pairwise version of hapbin (https://github.com/evotools/hapbin) for studying the strength of selection on multi-allelic haplotypes

    evotools/hapbinX’s past year of commit activity
    C++ 0 GPL-3.0 1 0 0 Updated Jun 23, 2017
  • mm-iHS Public

    Scripts for calculating mm-iHS

    evotools/mm-iHS’s past year of commit activity
    Perl 0 GPL-3.0 0 0 0 Updated May 16, 2016

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