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DRAGEN: update Ploidy-Estimation-Metrics module #1911

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@Just-Roma Just-Roma commented Apr 25, 2023

New version of dragen/ploidy_estimation_metrics module.

  • Improved configurations.
  • Dedicated table and linegraph.
  • Additional non-standard column "Autosome median / Autosomal median" ratios out of defined range. The default range is [0.95, 1.05]. but user can set their own in yaml configs. This column can be quickly taken out of table if it is not needed.

Merging:

  • merging this PR would require updates in dragen/dragen.py and multiqc/utils/search_patterns.yaml
    in PR1912, PR1913, PR1914, PR1915. But not in the dragen/utils.py, because it is the same. The main file must be also included, of course.

@your-highness
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Hm... That's weird: Why are some tests cancelled? I don't see any problem here

Just-Roma and others added 4 commits May 31, 2023 18:25
Restart tests. It fails because of the "rich" library. Not sure why, actually there shall be no issues with rich for py 3.6.1 and above
Restart the tests. Maybe the problem with rich lib was fixed.
restore the search pattern to the previous one
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4 participants