Automate build and deploy processes

[julesjacobsen]

This is clunky at the moment and relies on a few manual steps to pull everything together and deploy.

This could be achieved by setting up a GO CD server:

http://www.go.cd/download/

need to ask systems for a VM to deploy this to.

[julesjacobsen]

Have created GO pipeline called exomiser-build-development. Need to add GO user authentication here so the repo can be cloned.

[julesjacobsen]

This may be more flexible and cross-platform if we moved from Maven to Gradle. This is much less mature than Maven, but seems to be gaining popularity due to it's flexible nature.

[julesjacobsen]

The data and code are seperatly built and deployed as of 7.2.0.

in release.sh:

cd /warehouse/team110_wh01/jj8/exomiser
#rename the distribution directory to the current release number
mv exomiser-cli-7.1.0 exomiser-cli-7.2.0
zip -r exomiser-cli-7.2.0-data.zip exomiser-cli-7.2.0/data
#ftp the distribution from the build server to here
sha256sum exomiser-cli-7.2.0-distribution.zip exomiser-cli-7.2.0-data.zip > exomiser-cli-7.2.0.sha256
cp exomiser-cli-7.2.0-distribution.zip exomiser-cli-7.2.0-data.zip exomiser-cli-7.2.0.sha256 /nfs/disk69/ftp/pub/resources/software/exomiser/downloads/exomiser/.


#zip -r exomiser-cli-7.2.0-distribution.zip exomiser-cli-7.2.0 -x exomiser-cli-7.2.0/data\* #(built as per normal distribution)