This repository contains data extracted from the ECDC surveillance and Ministry of Health, Uganda bulletins in collaboration with the World Health Organization - Regional Office for Africa (WHO AFRO).
- 2022-10-29: From this date data file (
Surveillance_hospital_data_Ebola_outbreak.csv) contains case management summaries to accurately reflect the situation in hospitals. - 2022-11-11: From this date data files (
epicurve_by_onset_date.csv,epicurve_by_notification_sex.csv) have cases (confirmed and probable) per date of notification by sex. - 2022-11-15: From this date data file (
epicurve_by_onset_date_district.csv) have cases (confirmed and probable) per date of notification by district.
Direct download (CSV): https://raw.githubusercontent.com/fbranda/ebola/main/Surveillance_data_Ebola_outbreak.csv
Python (requires pandas):
import pandas as pd
df = pd.read_csv("https://raw.githubusercontent.com/fbranda/ebola/main/Surveillance_data_Ebola_outbreak.csv")R (requires httr):
library(httr)
df <- read.csv(text=content(GET("https://raw.githubusercontent.com/fbranda/ebola/main/Surveillance_data_Ebola_outbreak.csv")))- Branda F, Maruotti A. 2022 Uganda Ebola outbreak: early descriptions and open data. Journal of Medical Virology. 2022 Nov 24.
- Branda, Francesco and Mahal, Ahmed and Maruotti, Antonello and Pierini, Massimo and Mazzoli, Sandra. The challenges of open data for future epidemic preparedness: The experience of the 2022 Ebolavirus outbreak in Uganda
This repository and data exports are published under the CC BY 4.0 license.