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  • UCSD
  • San Diego

Popular repositories

  1. Flye

    Fast and accurate de novo assembler for single molecule sequencing reads

    C++ 137 23

  2. Ragout

    Chromosome-level scaffolding using multiple references

    Python 53 14

  3. maf2synteny

    A tool for recovering synteny blocks from multiple alignment

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  4. Nano-Align

    Angorithms for protein identification using a sub-nanopore

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  5. ig-corrector

    A tool for immunoglobulines NGS data processing

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  6. debrujin

    Useless debrujin graph implementation


576 contributions in the last year

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Contribution activity

April 2019

Created a pull request in bioconda/bioconda-recipes that received 1 comment


I have read the guidelines for bioconda recipes. This PR adds a new recipe. AFAIK, this recipe is directly relevant to the biological sciences

+5 −5 1 comment

Created an issue in bioconda/bioconda-recipes that received 1 comment

Package is built, but tests are failing for MacOS

Hi, I was updating Ragout to version 2.2 and bumped in the following issue. Linux build is passing, while MacOS tests are failing. Interestingly, i…

1 comment

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