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+ SparqlTest
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Eric Prud'hommeaux committed Jun 21, 2023
1 parent 49c3a18 commit 35dee35
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38 changes: 38 additions & 0 deletions hapi-fhir-sparql/.gitignore
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target/
!.mvn/wrapper/maven-wrapper.jar
!**/src/main/**/target/
!**/src/test/**/target/

### IntelliJ IDEA ###
.idea/modules.xml
.idea/jarRepositories.xml
.idea/compiler.xml
.idea/libraries/
*.iws
*.iml
*.ipr

### Eclipse ###
.apt_generated
.classpath
.factorypath
.project
.settings
.springBeans
.sts4-cache

### NetBeans ###
/nbproject/private/
/nbbuild/
/dist/
/nbdist/
/.nb-gradle/
build/
!**/src/main/**/build/
!**/src/test/**/build/

### VS Code ###
.vscode/

### Mac OS ###
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116 changes: 116 additions & 0 deletions hapi-fhir-sparql/pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.7.6-SNAPSHOT</version>
</parent>

<artifactId>hapi-fhir-sparql</artifactId>

<properties>
<maven.compiler.source>17</maven.compiler.source>
<maven.compiler.target>17</maven.compiler.target>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>

<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>6.7.6-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.fhir</groupId>
<artifactId>ucum</artifactId>
<!-- <exclusions>-->
<!-- <exclusion>-->
<!-- <groupId>xpp3</groupId>-->
<!-- <artifactId>xpp3</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>junit</groupId>-->
<!-- <artifactId>junit</artifactId>-->
<!-- </exclusion>-->
<!-- </exclusions>-->
</dependency>
<!-- <dependency>-->
<!-- <groupId>ca.uhn.hapi.fhir</groupId>-->
<!-- <artifactId>hapi-fhir-converter</artifactId>-->
<!-- <version>${project.version}</version>-->
<!-- </dependency>-->

<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-caching-api</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-caching-caffeine</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
<version>${project.version}</version>
<optional>true</optional>
</dependency>

<!-- <dependency>-->
<!-- <groupId>ca.uhn.hapi.fhir</groupId>-->
<!-- <artifactId>org.hl7.fhir.validation</artifactId>-->
<!-- <version>${fhir_core_version}</version>-->
<!-- <exclusions>-->
<!-- <exclusion>-->
<!-- <groupId>info.cqframework</groupId>-->
<!-- <artifactId>elm</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>info.cqframework</groupId>-->
<!-- <artifactId>cql-to-elm</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>info.cqframework</groupId>-->
<!-- <artifactId>quick</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>info.cqframework</groupId>-->
<!-- <artifactId>qdm</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>info.cqframework</groupId>-->
<!-- <artifactId>cql</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>info.cqframework</groupId>-->
<!-- <artifactId>model</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>io.javalin</groupId>-->
<!-- <artifactId>javalin</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>junit</groupId>-->
<!-- <artifactId>junit</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>org.apache.commons</groupId>-->
<!-- <artifactId>commons-collections4</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>xpp3</groupId>-->
<!-- <artifactId>xpp3</artifactId>-->
<!-- </exclusion>-->
<!-- </exclusions>-->
<!-- </dependency>-->
</dependencies>
</project>
51 changes: 51 additions & 0 deletions hapi-fhir-sparql/src/test/java/org/uu3/sparql/SparqlTest.java
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package org.uu3.sparql;

import ca.uhn.fhir.context.FhirContext;
import org.fhir.ucum.UcumException;
import org.hl7.fhir.r4.hapi.ctx.HapiWorkerContext;
import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.model.CodeableConcept;
import org.hl7.fhir.r4.model.Coding;
import org.hl7.fhir.r4.model.Observation;
import org.hl7.fhir.r4.model.Quantity;
import org.hl7.fhir.r4.utils.FHIRPathEngine;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Test;

import java.util.List;

import static org.junit.jupiter.api.Assertions.assertEquals;

class SparqlTest {
private static final FhirContext ourCtx = FhirContext.forR4Cached();
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(SparqlTest.class);
private static FHIRPathEngine ourEngine;

@Test
public void testAs() {
assertEquals(1, 1);
}

@Test
public void testComponentCode() {
String path = "(Observation.component.value.ofType(FHIR.Quantity)) ";

Observation o1 = new Observation();
o1.addComponent()
.setCode(new CodeableConcept().addCoding(new Coding().setSystem("http://foo").setCode("code1")))
.setValue(new Quantity().setSystem("http://bar").setCode("code1").setValue(200));
o1.addComponent()
.setCode(new CodeableConcept().addCoding(new Coding().setSystem("http://foo").setCode("code2")))
.setValue(new Quantity().setSystem("http://bar").setCode("code2").setValue(200));

List<Base> outcome = ourCtx.newFhirPath().evaluate(o1, path, Base.class);
assertEquals(2, outcome.size());

}

@BeforeAll
public static void beforeClass() {
Exception ex = new UcumException();
ourEngine = new FHIRPathEngine(new HapiWorkerContext(ourCtx, ourCtx.getValidationSupport()));
}
}
3 changes: 2 additions & 1 deletion pom.xml
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<module>tests/hapi-fhir-base-test-mindeps-server</module>
<module>hapi-fhir-spring-boot</module>
<module>hapi-fhir-jacoco</module>
</modules>
<module>hapi-fhir-sparql</module>
</modules>

<dependencies>
<dependency>
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