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Federal University of Rio de Janeiro
- Rio de Janeiro, RJ, Brazil
- @filiperomero2
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ViralUnity
ViralUnity PublicViralUnity is an integrated pipeline designed for comprehensive data quality control, metagenomic analysis, and reference assembly of viral genomes. It streamlines the process of handling viral gen…
Python 3
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SC2_lineage_B.1.1.7_in_Brazil
SC2_lineage_B.1.1.7_in_Brazil PublicData and code for a genomic epidemiology on the spread of SARS-CoV-2 lineage B.1.1.7 in Brazil. See: https://virological.org/t/emergence-and-spread-of-sars-cov-2-lineage-b-1-1-7-in-brazil/638
Shell 1
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Genomic_Surveillance_in_Belo_Horizonte
Genomic_Surveillance_in_Belo_Horizonte PublicThis repo contains data and results of our ongoing genomic epidemiology study in Belo Horizonte. Any doubts, please refer to myself (filiperomero@gmail.com) or Dr. Renato Santana de Aguiar (santana…
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Get_IDT_input
Get_IDT_input PublicThis repo contains a simple python script to generate fasta files with a specific format required by IDT to perform primer desing with rhAmp technology.
Python
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RT-Metagenomics
RT-Metagenomics PublicThis repo contains code and test data for RT-Meta, an app for real time metagenomic analysis with nanopore sequecing data.
JavaScript
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CHIKV_RJ_2015-2018
CHIKV_RJ_2015-2018 PublicThis repository contains data, code and results of a research project on the epidemiology of Chikungunya virus in Rio de Janeiro between 2015 and 2018 (https://doi.org/10.1101/2023.04.12.23288482).
R
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