DHARMa 0.4.6

New Features

• new function benchmarkRuntime() for checking runtime of functions
• new function simulatedLRT() to generate a simulated likelihood ratio test

Bugfixes

• fixed issue with parallelization in runBenchmarks
• various minor bugfixed and help improvements

DHARMa 0.4.5

Minor changes

• included option to simulate mgcv models using the functions implemented in mgcViz which should improve mgcv compatibility with DHARMa

• Added option to include plot title in plot() #320

Bugfixes

• fixed issues with plotting, see #313 and #274

DHARMa 0.4.4

DHARMa 0.4.4

Major changes

• remodelled tests so that all tested packages can be used conditionally

Minor changes

• re-introduced glmmTMB to suggests
• phyr moved to enhances
• re-modelled package unit tests
• added RStan, CmdStanR, rjags, BayesianTools to enhances, as they coudld be used with DHARMa
• moved parallel calculations in runBenchmark to R native parallel functions

New features

• Added rotation option to all functions that create residuals (simulateResiduals, recalculateResiduals, createDHARMa)

Documentation

• Added help comments about autocorrelation structures, in particular in simulateResiduals, testSpatialAutocorrelation, testTemporalAutocorrelation
• Added example about the use of rotation in testTemporalAutocorrelation
• Improved help of dispersion test

DHARMa 0.4.3.1

reintroduced glmmTMB

DHARMa 0.4.3

Bugfixes

• Removed glmmTMB completely, see #289

DHARMa 0.4.2

Bugfixes

• Moved glmmTMB from suggest to import because this package is used in the vignette, see #289

Minor changes

• Added hurricane dataset
• Help and vignette updates

DHARMa 0.4.1

Bugfixes

• Force method = traditional for refit = T, as it turns out that the PIT method is not a good idea on the residuals, see #272

DHARMa 0.4.0

This is a bugfix release for 0.3.4, but on reflection I decided that 0.4.0 should have been a minor release, so I pushed the version number up to 0.4.0

DHARMa 0.3.4

0.3.4 is a relatively important release with various minor improvements a smaller new features, most noteworthy the support of glmmAdaptive

New features

• added parametric dispersion test in testDispersion (0.3.3.2)
• support for glmmAdaptive (0.3.3.1)
• new plot for categorical predictors
• new plots for result of runBenchmarks

Major changes

Minor changes

• changed test statistics in standard dispersion test to standardized variance, to be more in line with standard dispersion parameters
• defaults for plot function unified
• removed option to provide no x,y / time in the correlation tests
• recalculateResiduals now allows subsetting #246
• better input checking in correlation tests #190

Bugfixes

• bugfix in runBenchmarks included in #247
• bugfix in testQuantiles #261
• bugfix in getRandomState #254

DHARMa 0.3.3.2

This is a pre-release for 0.3.4, containing all the important changes, in particular the overdispersion branch