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README.md

Docker Repository on Quay

The NeuroLINCS Galaxy

The NeuroLINCS Consortium and AnswerALS use Galaxy to perform reproducible computational analysis.

This docker image inherits from bgruening/docker-galaxy-stable and adds:

  • Configuration in the form of environment variables.
  • A suite of tools we use, which you can find in tools.yml.
  • Our standard workflows for each 'omic.
  • A custom homepage.
  • An additional set of ports we expose.

You can find examples of this image running at answer.csbi.mit.edu/.

Notes:

  • Installing tools is done in the conventional way, but once a tool has been successfully installed, make sure to

     $ docker exec <container-id> supervisorctl restart galaxy:
    

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The NeuroLINCS Galaxy Flavor

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