Correlation-based Local Approximation of Membership (CLAM)

What is it?

CLAM is an analytical framework for detecting co-regulated gene modules by integrating multi-omics data and known molecular interactions.

Software requirements

• Java 1.5 or later must be installed. Download link
• 1024 MB Java heap memory minimum.
• Operating systems: Platform independent

Running

• Once Java is installed, to start CLAM in Microsoft Windows double click on CLAM.jar.
• Otherwise start CREAM from a command line while in the drem directory, enter the command: java -mx1024M -jar CLAM.jar
• If CLAM reports ‘Out of Memory Error’, the user can increase the -mx parameter.
• A detailed description can be found in 'User manual.pdf'.

Contact

For any questions please contact Dr. Mingfei Han (Email: free1234hm@163.com).

License

• This software product is developed by the National Center for Protein Sciences (Beijing)-Bioinformatics group. The software is distributed GPL v3.0 license.