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Wikidata's Tree Of Life

Right now, it's not working properly/at all. Better use the biota branch until this one is working again.

Uses jstree (http://www.jstree.com/). Download jstree and unzip the dist folder.

You will need MYSQLdb (python) for Tree.py and curl (php) for data.php.

To download a wikidata dump use the download.py file. (You might want to change the date to the most recent dump there is. https://dumps.wikimedia.org/other/wikidata/)

Use Tree.py to populate the database.

Demo: https://tools.wmflabs.org/tree-of-life/

The branch 'biota' shows the tree with a single root node (biota).

TODO:

  • already for the root nodes, data.php needs to long to get them all from the database (too many nodes)
  • works only if memory limit is manipulated (not cool)
  • handle places where sql injections are possible now!
  • investigate on the errors in data.php
  • refactor:
    • refactor data.php
  • include api requests again
  • hasChildren in or out?

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Creating a tree of life with data from wikidata

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