[23.2] Backport Rollback invalidated transaction: catch them earlier #21490
Workflow file for this run
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name: Database indexes | |
on: | |
push: | |
paths-ignore: | |
- 'client/**' | |
- 'doc/**' | |
- 'lib/galaxy_test/selenium/**' | |
pull_request: | |
paths-ignore: | |
- 'client/**' | |
- 'doc/**' | |
- 'lib/galaxy_test/selenium/**' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
defaults: | |
run: | |
working-directory: 'galaxy root' | |
jobs: | |
check: | |
name: Check database indexes | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
db: ['postgresql', 'sqlite'] | |
postgresql-version: ['13'] | |
python-version: ['3.7'] | |
include: | |
- db: postgresql | |
postgresql-version: '9.6' | |
python-version: '3.7' | |
services: | |
postgres: | |
image: postgres:${{ matrix.postgresql-version }} | |
env: | |
POSTGRES_USER: postgres | |
POSTGRES_PASSWORD: postgres | |
POSTGRES_DB: postgres | |
ports: | |
- 5432:5432 | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
path: 'galaxy root' | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Get full Python version | |
id: full-python-version | |
shell: bash | |
run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT | |
- name: Cache pip dir | |
uses: actions/cache@v3 | |
id: pip-cache | |
with: | |
path: ~/.cache/pip | |
key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }} | |
- name: Cache tox env | |
uses: actions/cache@v3 | |
with: | |
path: .tox | |
key: tox-cache-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-check-indexes | |
- name: Install tox | |
run: pip install tox | |
- name: Set database connection on PostgreSQL | |
if: matrix.db == 'postgresql' | |
run: echo 'GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION=postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8' >> $GITHUB_ENV | |
- name: Check indexes | |
run: tox -e check_indexes |