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megablast_xml_parser_test1.blastxml should now sniff as blastxml
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peterjc committed Nov 4, 2016
1 parent f9eff95 commit 0152254
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions lib/galaxy/datatypes/sniff.py
Expand Up @@ -261,14 +261,14 @@ def guess_ext( fname, sniff_order, is_multi_byte=False ):
Returns an extension that can be used in the datatype factory to
generate a data for the 'fname' file
>>> fname = get_test_fname('megablast_xml_parser_test1.blastxml')
>>> from galaxy.datatypes import registry
>>> sample_conf = os.path.join(util.galaxy_directory(), "config", "datatypes_conf.xml.sample")
>>> datatypes_registry = registry.Registry()
>>> datatypes_registry.load_datatypes(root_dir=util.galaxy_directory(), config=sample_conf)
>>> sniff_order = datatypes_registry.sniff_order
>>> fname = get_test_fname('megablast_xml_parser_test1.blastxml')
>>> guess_ext(fname, sniff_order)
'xml'
'blastxml'
>>> fname = get_test_fname('interval.interval')
>>> guess_ext(fname, sniff_order)
'interval'
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