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Merge pull request #2363 from jmchilton/test_composite
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Improve composite output tool test.
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dannon committed May 16, 2016
2 parents d9c0f4f + 1ba7409 commit 28acca5
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Showing 2 changed files with 6 additions and 2 deletions.
2 changes: 2 additions & 0 deletions test-data/composite_output_expected_log
@@ -0,0 +1,2 @@
Fri May 28 13:27:22 2010
./velveth /Users/jj/src/wf/galaxy/galaxy-central/test-data/velveth_test1 21 -shortPaired /Users/jj/src/wf/galaxy/galaxy-central/test-data/velvet_test_reads.fa
6 changes: 4 additions & 2 deletions test/functional/tools/composite_output.xml
@@ -1,5 +1,5 @@
<tool id="composite_output" name="composite_output" version="1.0.0">
<command>mkdir $output.extra_files_path; cp $input.extra_files_path/* $output.extra_files_path</command>
<command>mkdir $output.extra_files_path; cp $input.extra_files_path/* $output.extra_files_path; cp $input.extra_files_path/Log $output.extra_files_path/second_log; mkdir $output.extra_files_path/nested; cp $input.extra_files_path/Log $output.extra_files_path/nested/nested_log</command>
<inputs>
<param name="input" type="data" format="velvet" label="Velvet Dataset" help="Prepared by velveth."/>
</inputs>
Expand All @@ -17,7 +17,9 @@
<output name="output" file="velveth_test1/output.html">
<extra_files type="file" name="Sequences" value="velveth_test1/Sequences" />
<extra_files type="file" name="Roadmaps" value="velveth_test1/Roadmaps" />
<extra_files type="file" name="Log" value="velveth_test1/Log" />
<extra_files type="file" name="Log" value="composite_output_expected_log" />
<extra_files type="file" name="second_log" value="composite_output_expected_log" />
<extra_files type="file" name="nested/nested_log" value="composite_output_expected_log" />
</output>
</test>
</tests>
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