stdin and stdout needs a PIPE to retrive the stdout

galaxyproject · May 23, 2016 · 5360436 · 5360436
1 parent 2eee6e2
commit 5360436
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/lib/galaxy/tools/deps/commands.py b/lib/galaxy/tools/deps/commands.py
@@ -70,7 +70,7 @@ def execute(cmds):
 
     Return the standard output if the commands are successful
     """
-    return _wait(cmds, shell=False)
+    return __wait(cmds, shell=False, stdin=subprocess.PIPE, stdout=subprocess.PIPE)
 
 
 def _wait(cmds, **popen_kwds):