Merge pull request #6476 from jmchilton/sra_special_case

Rulebuilder: Special case auto URL schema detection for SRA inputs.
galaxyproject · Jul 16, 2018 · 6da93fc · 6da93fc
2 parents a72954d + 9356ff8
commit 6da93fc
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/client/galaxy/scripts/components/RuleCollectionBuilder.vue b/client/galaxy/scripts/components/RuleCollectionBuilder.vue
@@ -1705,7 +1705,13 @@ export default {
                 const urlColumn = mappingAsDict.url.columns[0];
                 let url = data[dataIndex][urlColumn];
                 if (url.indexOf("://") == -1) {
-                    url = "http://" + url;
+                    // special case columns containing SRA links. EBI serves these a lot
+                    // faster over FTP.
+                    if(url.indexOf("ftp.sra.") !== -1) {
+                        url = "ftp://" + url;
+                    } else {
+                        url = "http://" + url;
+                    }
                 }
                 res["url"] = url;
                 res["src"] = "url";