Remove debugging stuff, since everything works inside of docker

galaxyproject · Jun 27, 2017 · ab11273 · ab11273
1 parent bc13a16
commit ab11273
Showing 1 changed file with 4 additions and 5 deletions.
diff --git a/lib/galaxy/datatypes/registry.py b/lib/galaxy/datatypes/registry.py
@@ -677,8 +677,6 @@ def load_external_metadata_tool( self, toolbox ):
     def set_default_values( self ):
         # Default values.
         if not self.datatypes_by_extension:
-            #    'fastq'         : sequence.Fastq(),
-            #    'fastqsanger'   : sequence.FastqSanger(),
             self.datatypes_by_extension = {
                 'ab1'           : binary.Ab1(),
                 'axt'           : sequence.Axt(),
@@ -689,6 +687,8 @@ def set_default_values( self ):
                 'csfasta'       : sequence.csFasta(),
                 'db3'           : binary.SQlite(),
                 'fasta'         : sequence.Fasta(),
+                'fastq'         : sequence.Fastq(),
+                'fastqsanger'   : sequence.FastqSanger(),
                 'eland'         : tabular.Eland(),
                 'gemini.sqlite' : binary.GeminiSQLite(),
                 'gtf'           : interval.Gtf(),
@@ -761,9 +761,6 @@ def set_default_values( self ):
         # Default values - the order in which we attempt to determine data types is critical
         # because some formats are much more flexibly defined than others.
         if len( self.sniff_order ) < 1:
-            #after fasta
-            #    sequence.FastqSanger(),
-            #    sequence.Fastq(),
             self.sniff_order = [
                 binary.Bam(),
                 binary.Sff(),
@@ -779,6 +776,8 @@ def set_default_values( self ):
                 qualityscore.QualityScoreSOLiD(),
                 qualityscore.QualityScore454(),
                 sequence.Fasta(),
+                sequence.FastqSanger(),
+                sequence.Fastq(),
                 interval.Wiggle(),
                 text.Html(),
                 sequence.Axt(),