Python3: lib/galaxy/datatypes/converters/interval_to_bedstrict_conver…

…ter.py
galaxyproject · Jun 25, 2016 · c9ad6e3 · c9ad6e3
1 parent 1fadc33
commit c9ad6e3
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/.ci/py3_sources.txt b/.ci/py3_sources.txt
@@ -5,6 +5,7 @@ lib/galaxy/auth/
 lib/galaxy/config.py
 lib/galaxy/dataset_collections/
 lib/galaxy/datatypes/binary.py
+lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py
 lib/galaxy/datatypes/converters/interval_to_coverage.py
 lib/galaxy/dependencies/
 lib/galaxy/eggs/

diff --git a/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py b/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py
@@ -138,7 +138,7 @@ def __main__():
             except:
                 name = "region_%i" % count
             try:
-                fields = map( str, [ region.chrom, region.start, region.end, name, 0, region.strand ] )
+                fields = [str(item) for item in (region.chrom, region.start, region.end, name, 0, region.strand)]
                 if force_num_columns is not None and len( fields ) != force_num_columns:
                     fields = force_bed_field_count( fields, count, force_num_columns )
                 out.write( "%s\n" % '\t'.join( fields ) )
@@ -147,9 +147,9 @@ def __main__():
                 if first_skipped_line is None:
                     first_skipped_line = count + 1
         out.close()
-    print "%i regions converted to BED." % ( count + 1 - skipped_lines )
+    print("%i regions converted to BED." % ( count + 1 - skipped_lines ))
     if skipped_lines > 0:
-        print "Skipped %d blank or invalid lines starting with line # %d." % ( skipped_lines, first_skipped_line )
+        print("Skipped %d blank or invalid lines starting with line # %d." % ( skipped_lines, first_skipped_line ))
 
 if __name__ == "__main__":
     __main__()