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Otherwise failing currently when building in the container.
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# bx-python and dependencies | ||
numpy==1.9.2 | ||
python-lzo==1.11 | ||
bx-python==0.8.1 | ||
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# packages with C extensions | ||
MarkupSafe==1.0 | ||
PyYAML==3.12 | ||
SQLAlchemy==1.2.2 | ||
sqlalchemy-utils==0.32.19 | ||
mercurial==3.7.3; python_version < '3.0' | ||
pycrypto==2.6.1 | ||
uWSGI==2.0.15 | ||
# Flexible BAM index naming is new to core pysam | ||
pysam==0.14 | ||
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# pure Python packages | ||
bdbag==1.1.1 | ||
bleach==2.1.3 | ||
bz2file==0.98; python_version < '3.3' | ||
ipaddress==1.0.18; python_version < '3.3' | ||
boltons==17.1.0 | ||
Paste==2.0.3 | ||
PasteDeploy==1.5.2 | ||
docutils==0.14 | ||
repoze.lru==0.6 | ||
Routes==2.4.1 | ||
WebOb==1.4.1 | ||
Mako==1.0.2 | ||
pytz==2017.3 | ||
Babel==2.5.1 | ||
Beaker==1.7.0 | ||
dictobj==0.3.1 | ||
nose==1.3.7 | ||
Parsley==1.3 | ||
six==1.11.0 | ||
Whoosh==2.7.4 | ||
galaxy_sequence_utils==1.0.2 | ||
h5py==2.7.1 | ||
packaging==16.8 | ||
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# pykwalify and dependencies | ||
pykwalify==1.6.0 | ||
python-dateutil==2.5.3 | ||
docopt==0.6.2 | ||
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# Cheetah and dependencies | ||
Cheetah3==3.0.0 | ||
Markdown==2.6.3 | ||
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# Requests and dependencies | ||
requests==2.18.4 | ||
certifi==2017.7.27.1 | ||
urllib3==1.22 | ||
chardet==3.0.4 | ||
idna==2.6 | ||
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# BioBlend and dependencies | ||
bioblend==0.7.0 | ||
boto==2.38.0 | ||
requests-toolbelt==0.8.0 | ||
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# kombu and dependencies | ||
kombu==3.0.30 | ||
amqp==1.4.8 | ||
anyjson==0.3.3 | ||
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# Pulsar requirements | ||
psutil==4.1.0 | ||
pulsar-galaxy-lib==0.8.3 | ||
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# sqlalchemy-migrate and dependencies | ||
sqlalchemy-migrate==0.11.0 | ||
decorator==4.0.2 | ||
Tempita==0.5.3dev | ||
sqlparse==0.1.16 | ||
pbr==3.1.1 | ||
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# svgwrite and dependencies | ||
svgwrite==1.1.6 | ||
pyparsing==2.1.1 | ||
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# Fabric and dependencies | ||
Fabric3==1.13.1.post1 | ||
paramiko==2.2.1 | ||
ecdsa==0.13 | ||
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# GenomeSpace dependencies | ||
python-genomespaceclient==0.1.8 | ||
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# ISA | ||
git+https://github.com/ISA-tools/isa-rwval.git@develop#egg=isa-rwval | ||
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