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Update Python dependencies #15942

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merged 2 commits into from May 8, 2023

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galaxybot
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Run make update-dependencies.

cwltool==3.1.20221109155812 ; python_version >= "3.7" and python_version < "3.12"
cython==0.29.34 ; python_version >= "3.7" and python_version < "3.12"
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@nsoranzo nsoranzo Apr 15, 2023

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I think this is coming from pysam 0.21.0, which started using pyproject.toml , but shouldn't be needed. Should be fixed by pysam-developers/pysam#1186 .

@galaxybot galaxybot force-pushed the dev_auto_update_dependencies branch 2 times, most recently from f00442d to faa3b45 Compare April 29, 2023 03:11
@nsoranzo nsoranzo force-pushed the dev_auto_update_dependencies branch 3 times, most recently from a024531 to 547f838 Compare May 3, 2023 17:14
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nsoranzo commented May 3, 2023

Python linting failures fixed in #16035 .

@galaxybot galaxybot force-pushed the dev_auto_update_dependencies branch from 547f838 to 9d5970e Compare May 6, 2023 03:18
nsoranzo and others added 2 commits May 7, 2023 22:40
which mistakenly added Cython to its runtime dependencies.
Will be fixed by pysam-developers/pysam#1186 .
@nsoranzo nsoranzo force-pushed the dev_auto_update_dependencies branch from 9d5970e to f5bf2c7 Compare May 7, 2023 22:42
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nsoranzo commented May 8, 2023

This is ready to review/merge.

@mvdbeek mvdbeek merged commit 58b3a9d into galaxyproject:dev May 8, 2023
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3 participants