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[23.1] List extra files only for terminal datasets #16705
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bgruening
merged 1 commit into
galaxyproject:release_23.1
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mvdbeek:no_extra_files_for_pending
Sep 17, 2023
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[23.1] List extra files only for terminal datasets #16705
bgruening
merged 1 commit into
galaxyproject:release_23.1
from
mvdbeek:no_extra_files_for_pending
Sep 17, 2023
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Fixes: ``` WouldBlock: null File "anyio/streams/memory.py", line 98, in receive return self.receive_nowait() File "anyio/streams/memory.py", line 93, in receive_nowait raise WouldBlock EndOfStream: null File "starlette/middleware/base.py", line 78, in call_next message = await recv_stream.receive() File "anyio/streams/memory.py", line 118, in receive raise EndOfStream KeyError: None File "starlette/applications.py", line 122, in __call__ await self.middleware_stack(scope, receive, send) File "starlette/middleware/errors.py", line 184, in __call__ raise exc File "starlette/middleware/errors.py", line 162, in __call__ await self.app(scope, receive, _send) File "starlette_context/middleware/raw_middleware.py", line 93, in __call__ await self.app(scope, receive, send_wrapper) File "starlette/middleware/base.py", line 108, in __call__ response = await self.dispatch_func(request, call_next) File "galaxy/webapps/galaxy/fast_app.py", line 103, in add_x_frame_options response = await call_next(request) File "starlette/middleware/base.py", line 84, in call_next raise app_exc File "starlette/middleware/base.py", line 70, in coro await self.app(scope, receive_or_disconnect, send_no_error) File "starlette/middleware/exceptions.py", line 79, in __call__ raise exc File "starlette/middleware/exceptions.py", line 68, in __call__ await self.app(scope, receive, sender) File "fastapi/middleware/asyncexitstack.py", line 20, in __call__ raise e File "fastapi/middleware/asyncexitstack.py", line 17, in __call__ await self.app(scope, receive, send) File "starlette/routing.py", line 718, in __call__ await route.handle(scope, receive, send) File "starlette/routing.py", line 276, in handle await self.app(scope, receive, send) File "starlette/routing.py", line 66, in app response = await func(request) File "fastapi/routing.py", line 241, in app raw_response = await run_endpoint_function( File "fastapi/routing.py", line 169, in run_endpoint_function return await run_in_threadpool(dependant.call, **values) File "starlette/concurrency.py", line 41, in run_in_threadpool return await anyio.to_thread.run_sync(func, *args) File "anyio/to_thread.py", line 33, in run_sync return await get_asynclib().run_sync_in_worker_thread( File "anyio/_backends/_asyncio.py", line 877, in run_sync_in_worker_thread return await future File "anyio/_backends/_asyncio.py", line 807, in run result = context.run(func, *args) File "galaxy/webapps/galaxy/api/datasets.py", line 253, in extra_files return self.service.extra_files(trans, history_content_id) File "galaxy/webapps/galaxy/services/datasets.py", line 548, in extra_files extra_files_path = hda.extra_files_path File "galaxy/model/__init__.py", line 4421, in extra_files_path return self.dataset.extra_files_path File "galaxy/model/__init__.py", line 3989, in get_extra_files_path return self.object_store.construct_path( File "galaxy/objectstore/__init__.py", line 419, in construct_path return self._invoke("construct_path", obj, **kwargs) File "galaxy/objectstore/__init__.py", line 413, in _invoke return self.__getattribute__(f"_{delegate}")(obj=obj, **kwargs) File "galaxy/objectstore/__init__.py", line 1157, in _construct_path return self.backends[obj.object_store_id].construct_path(obj, **kwargs) ```
mvdbeek
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Sep 17, 2023
Otherwise we'd attempt to download results too early. That's how I discovered galaxyproject/galaxy#16705.
mvdbeek
added a commit
to mvdbeek/planemo
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Sep 17, 2023
Otherwise we'd attempt to download results too early. That's how I discovered galaxyproject/galaxy#16705.
bgruening
approved these changes
Sep 17, 2023
mvdbeek
added a commit
to mvdbeek/planemo
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this pull request
Sep 17, 2023
Otherwise we'd attempt to download results too early. That's how I discovered galaxyproject/galaxy#16705.
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Fixes:
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