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Add basic TIFF Image visualization #17553

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Feb 27, 2024
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1 change: 1 addition & 0 deletions client/gulpfile.js
Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,7 @@ const STATIC_PLUGIN_BUILD_IDS = [
"pv",
"nora",
"venn",
"tiffviewer",
"ts_visjs",
];
const DIST_PLUGIN_BUILD_IDS = ["new_user"];
Expand Down
18 changes: 18 additions & 0 deletions config/plugins/visualizations/tiffviewer/config/tiffviewer.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
<visualization name="Tiff Viewer">
<description>Basic Tiff Image visualization.</description>
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<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>

<test type="isinstance" test_attr="datatype" result_type="datatype">images.Tiff</test>

<to_param param_attr="id">dataset_id</to_param>
</data_source>
</data_sources>
<params>
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
</params>
<entry_point entry_point_type="chart" src="script.js" css="script.css"/>
</visualization>
24 changes: 24 additions & 0 deletions config/plugins/visualizations/tiffviewer/package.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,24 @@
{
"name": "tiff-visualization",
"version": "0.1.0",
"description": "A visualization for Tiff files based on react-tiff package",
"keywords": [
"galaxy",
"visualization",
"Tiff"
],
"license": "MIT",
"dependencies": {
"react": "18.2.0",
"react-dom": "18.2.0",
"react-tiff": "^0.0.8"
},
"scripts": {
"build": "parcel build src/script.js --dist-dir static"
},
"devDependencies": {
"buffer": "^5.5.0||^6.0.0",
"parcel": "^2.9.3",
"process": "^0.11.10"
}
}
29 changes: 29 additions & 0 deletions config/plugins/visualizations/tiffviewer/src/script.js
Original file line number Diff line number Diff line change
@@ -0,0 +1,29 @@
import { StrictMode } from "react";

import { TIFFViewer } from "react-tiff";
import { createRoot } from "react-dom/client";
import "react-tiff/dist/index.css";

const App = (props) => {
return <TIFFViewer tiff={props.dataset_url} paginate="bottom" />;
};

/* This will be part of the charts/viz standard lib in 23.1 */
const slashCleanup = /(\/)+/g;
function prefixedDownloadUrl(root, path) {
return `${root}/${path}`.replace(slashCleanup, "/");
}

window.bundleEntries = window.bundleEntries || {};
window.bundleEntries.load = function (options) {
const dataset = options.dataset;
const url = prefixedDownloadUrl(options.root, dataset.download_url);
const root = createRoot(document.getElementById(options.target));
root.render(
<StrictMode>
<App dataset_url={url} />
</StrictMode>
);
options.chart.state("ok", "Done.");
options.process.resolve();
};