mothur datatypes: don't generate error for pairwise distance matrices #2489
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
@shiltemann this is only a warning. Why does the tool fail with a warning? |
|
not sure, but planemo fails on this and if I upload in interface it also turns red ..don't know if anything changed recently, because I could have sworn this didn't fail earlier |
|
I will leave this open for @jmchilton or @martenson. Maybe this is a regression. |
|
Logging to standard error during metadata generation is problematic - many Galaxy jobs including 👍 |
|
Thanks @jmchilton for clarification. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
pairwise distance matrices don't (always) have the number of sequences on the first line, so don't generate an error
ping @bgruening (without this some of the mothur tests will still fail)