Add compressed fastq peek and preview #3512
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mvdbeek
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Wonderful as always - thanks a ton @mvdbeek! |
jmchilton
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Feb 3, 2017
This seems to be needed to test fastq outputs from tools. Gzipped files seem to depend on the file name before compression - so diff compares (even binary ones) do not work. This allows comparing compressed outputs (and it will magically work if the expected file in test-data is compressed or not). Builds on the awesome work from @mvdbeek in galaxyproject#3512.
This was referenced May 31, 2017
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and unify various places in the code that open optionally compressed files.
This addresses
provide 'peak' of gzipped contentsof #3498.