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Fix virtualenv activation for some scripts #4616

Merged
merged 1 commit into from
Sep 15, 2017

Commits on Sep 14, 2017

  1. Fix virtualenv activation for some scripts

    In particular add virtualenv activation to extract_dataset_parts.sh
    to fix the following error when running tools which use
    `<parallelism>`:
    ```
    Fatal error:
    /tmp/tmpOoQ01k/job_working_directory/000/12/task_0:
    Traceback (most recent call last):
    File "./scripts/extract_dataset_part.py", line 17, in <module>
    import galaxy.model.mapping  # need to load this before we unpickle, in order to setup properties assigned by the mappers
    File "/opt/galaxyproject_galaxy_release_17.05/lib/galaxy/model/__init__.py", line 20, in <module>
    from six import string_types
    ModuleNotFoundError: No module named 'six'
    ```
    nsoranzo committed Sep 14, 2017
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