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Tool Request: Plugin: Adding nonsense mediated decay (NMD) plugin to ensembl_vep #6122

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prao123 opened this issue Jul 2, 2024 · 1 comment

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@prao123
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prao123 commented Jul 2, 2024

Hello,
I wanted to check if a plugin for ensembl_vep tool (already in Galaxy) could be added to te tool: nmd or nonsense mediated decay which predicts whether a transcript escapes the nonsense mediated decay process. Would be a good addition for filtering variants (InDels, Fusions, splice variants).
https://github.com/Ensembl/VEP_plugins/blob/release/112/NMD.pm

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@prao123
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prao123 commented Jul 15, 2024

Bumping this request for visibility. I can try and help in any way (testing vcf files, etc).

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