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Achievement: Starstruckx3Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx3Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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gamcil/README.md

Hi there 👋

  • 🔭 Currently a postdoc at the Steinegger Lab @ Seoul National University, South Korea (ex. Chooi Lab, The University of Western Australia)
  • 🌱 Interested in developing bioinformatics tools and interactive visualisations
  • 📫 Email: gamcil@snu.ac.kr

Some projects I've worked on:

  • clinker & clustermap.js, a pipeline for generating interactive visualisations of homologous gene clusters clinker demo
  • cblaster, a search tool for identifying homologous gene clusters in NCBI sequence databases
  • synthaser, a tool for automatically annotating & classifying domain architectures of multi-domain proteins
  • Protein structure visualisation in Foldseek, a protein structure search tool

If you want to support me:

Buy Me A Coffee

Pinned Loading

  1. clinker clinker Public

    Gene cluster comparison figure generator

    Python 528 72

  2. cblaster cblaster Public

    Find clustered hits from a BLAST search

    HTML 97 21

  3. clustermap.js clustermap.js Public

    JavaScript 30 5

  4. synthaser synthaser Public

    Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases

    Python 19 3