PASTIS: Poisson-based algorithm for stable inference of DNA Structure

Dependencies

For Pastis:

• python 2.7
• numpy
• scipy
• scikit-learn
• pandas

All of these dependencies can be installed easily using conda python2.7: http://conda.pydata.org/miniconda.html

Once conda is installed, just type the following:

conda install numpy scipy scikit-learn pandas

and then install pastis with:

python setup.py install

Install

Pastis

This package uses distutils, which is the default way of installing python modules. To install in your home directory, use:

python setup.py install --user

To install for all users on Unix/Linux:

python setup.py build
sudo python setup.py install