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README.md

random-world Build Status Version DOI

This is a rust implementation of Machine Learning (ML) methods for confident prediction (e.g., Conformal Predictors) and related ones introduced in the book Algorithmic Learning in a Random World (ALRW), which also provides standalone binaries.

Goals

These are the main goals of this library.

  • Fast implementation of methods described in ALRW book
  • Be well documented
  • Provide standalone binaries
  • CP method should be able to use scoring classifiers from existing ML libraries (e.g., rusty-machine, rustlearn)
  • Easily interface with other languages (e.g., Python)

Binaries

Standalone binaries are meant to cover most functionalities of the library. They operate on .csv files, and allow to make CP predictions, test exchangeability, and much more.

Installation

To install the binaries, install Rust's package manager cargo. Then run:

$ cargo install random-world

This will install on your system the binaries: cp-predict, icp-predict, and martingales.

cp-predict

cp-predict allows making batch and on-line CP predictions. It runs CP on a training set, and uses it to predict a test set; each dataset should be contained in a CSV file with rows:

label, x1, x2, ...

where label is a label id, and x1, x2, ... are the values forming a feature vector. It is important that label ids are 0, 1, ..., n_labels-1 (i.e., with no missing values); one can specify --n-labels if not all labels are available in the initial training data (e.g., in on-line mode).

Results are returned in a CSV file with rows:

p1, p2, ...

where each value is either a prediction (true/false) or a p-value (float in [0,1]), depending on the flags passed to cp-predict; each row contains a value for each label.

Example:

$ cp-predict knn -k 1 predictions.csv train_data.csv test_data.csv

Runs CP with nonconformity measure k-NN (k=1) on train_data.csv, predicts test_data.csv, and stores the output into predictions.csv. The default output are p-values; to output actual predictions, specify a significance level with --epsilon.

To run CP in on-line mode on a dataset (i.e., predict one object per time and then append it to the training examples), only specify the training file:

$ cp-predict knn -k 1 predictions.csv train_data.csv

More options are documented in the help:

$ cp-predict -h

Predict data using Conformal Prediction.

If no <testing-file> is specified, on-line mode is assumed.

Usage: cp knn [--knn=<k>] [options] [--] <output-file> <training-file> [<testing-file>]
       cp kde [--kernel<kernel>] [--bandwidth=<bw>] [options] [--] <output-file> <training-file> [<testing-file>]
       cp (--help | --version)

Options:
    -e, --epsilon=<epsilon>     Significance level. If specified, the output are
                                label predictions rather than p-values.
    -s, --smooth                Smooth CP.
    --seed=<s>                   PRNG seed. Only used if --smooth set.
    -k, --knn=<kn>              Number of neighbors for k-NN [default: 5].
    --n-labels=<n>              Number of labels. If specified in advance it
                                slightly improves performances.
    -h, --help                  Show help.
    --version                   Show the version.

icp-predict

The syntax for icp-predict is currently identical to that of cp-predict: the size of the calibration set is chosen to be half the size of the training set. This will change (hopefully soon).

martingales

Computes exchangeability martingales from a file of p-values. P-values should be computed using cp-predict in an on-line setting for a single label problem.

$ martingales -h

Test exchangeability using martingales.

Usage: martingales plugin [--bandwidth=<bw>] [options] <output-file> <pvalues-file>
       martingales power [--epsilon=<e>] [options] <output-file> <pvalues-file>
       martingales (--help | --version)

Options:
    --seed                      PRNG seed.
    -h, --help                  Show help.
    --version                   Show the version.

Example:

Have a look at examples/non-iid.csv:

0,1.77750,-0.84078
0,-1.68787,3.86305
0,-0.56455,0.17416
0,-0.86380,0.39916
...

These represent anomalous time series data, artificially generated to serve as an example for this very code; do not use it as an anomaly detection benchmark: it will have little use. Each line contains a label (always set to 0, which is required for computing martingales in the next steps), and a vector. These data contains 200 examples: the first 100 were generated according to a multivariate Normal distribution centered in [0, 0] and with covariance matrix [[1, 0], [0, 5]]; the last 200 examples according to a multivariate Normal distribution with mean [5, 5] and covariance [[5, 0], [0, 10]]. Therefore, the "anomalous" section of the data begins after 100 examples.

To produce the martingales:

# Use CP in on-line mode
cp-predict knn -k 1 pvalues.csv examples/non-iid.csv
# Martingales
martingales plugin --bandwidth=0.2 martingales.csv pvalues.csv

Have a look at martingales.csv: it should now contain the martingale values, one per line. You can call anomalous behaviour whenever the martingale's value is over a threshold (e.g., 20 or 100). Here's a plot of the martingales values for this specific example.

With threshold 20, the anomaly is detected roughly 50 examples after the anomaly happens.

Library

To exploit all the functionalities, or to integrate it into your project, you may want to use the actual library.

Include the following in Cargo.toml:

[dependencies]
random-world = "0.3.0"

Quick Intro

Using a deterministic (i.e., non smooth) Conformal Predictor with k-NN nonconformity measure (k=2) and significance level epsilon=0.3. The prediction region will contain the correct label with probability 1-epsilon.

#[macro_use(array)]
extern crate ndarray;
extern crate random_world;

use random_world::cp::*;
use random_world::ncm::*;

// Create a k-NN nonconformity measure (k=2)
let ncm = KNN::new(2);
// Create a Conformal Predictor with the chosen nonconformity
// measure and significance level 0.3.
let mut cp = CP::new(ncm, Some(0.3));

// Create a dataset
let train_inputs = array![[0., 0.],
                          [1., 0.],
                          [0., 1.],
                          [1., 1.],
                          [2., 2.],
                          [1., 2.]];
let train_targets = array![0, 0, 0, 1, 1, 1];
let test_inputs = array![[2., 1.],
                         [2., 2.]];

// Train and predict
cp.train(&train_inputs.view(), &train_targets.view())
  .expect("Failed prediction");
let preds = cp.predict(&test_inputs.view())
              .expect("Failed to predict");
assert!(preds == array![[false, true],
                        [false, true]]);

Please, read the docs for more examples.

Features

Methods:

  • Deterministic and smoothed Conformal Predictors (aka, transductive CP)
  • Deterministic Inductive Conformal Predictors (ICP)
  • Plug-in and Power martingales for exchangeability testing
  • Venn Predictors

Nonconformity measures:

  • k-NN
  • KDE
  • Generic wrapper around ML scorers from existing libraries (e.g., rusty-machine)

Binaries:

  • CP (both batch prediction and on-line)
  • Martingales
  • Inductive CP (batch prediction only)

Bindings:

  • Python bindings

Authors

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Standalone implementation of Conformal Prediction and other distribution-free Machine Learning methods.

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