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Obsoletion request: GO:0036212 contractile ring localization #25606

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12 of 17 tasks
ValWood opened this issue Jun 23, 2023 · 5 comments
Closed
12 of 17 tasks

Obsoletion request: GO:0036212 contractile ring localization #25606

ValWood opened this issue Jun 23, 2023 · 5 comments

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@ValWood
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ValWood commented Jun 23, 2023

Please provide as much information as you can:

There are 2 places to annotate ring positioning:

Screenshot 2023-06-23 at 14 37 03
  • 1. GO term ID and Label GO:0032189 maintenance of actomyosin contractile ring localization
    Any process in which an actomyosin contractile ring is maintained in a location and prevented from moving elsewhere.
  • Reason for deprecation
  • The reason for obsoletion is that this represents a phenotype.
    (Once the ring is positioned it does not move in a normal situation)
    0 annotations

  • 2. * GO term ID and Label GO:0032187 actomyosin contractile ring localization

  • Reason for deprecation
  • The term is redundant with other terms in a different branch
    The process in which a contractile ring is positioned or maintained in a specific location, in the context of cytokinesis that takes place as part of a cell cycle.
    Consider "cytokinesis division site positioning"
    FlyBase2
    CGD 1

  • 3. * GO term ID and Label GO:0036212 contractile ring maintenance

  • Reason for deprecation
  • The term is redundant with other terms in a different branch
    Consider GO:0000915 actomyosin contractile ring assembly
    Cacao 1
  • Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section)

  • Is this term in a subset? (check the AmiGO page for that term)

  • Any other information


Checklist for ontology editor

Check term usage and metadata in Protégé

  • check term usage in the ontology
  • check internal mappings: RHEA, EC, MetaCyc
  • check subset usage
  • check taxon constraints

Check annotations

  • create Annotation Review spreadsheet

https://docs.google.com/spreadsheets/d/1nKlwFfm8vXAPz5sJyPtGb16YXE70JupOpAMr1Mx2ytc/edit#gid=0

Notification

@ValWood
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ValWood commented Jun 23, 2023

removed

  • GO:0032187 | actomyosin contractile ring localization | Only in Taxon | 2759 | Eukaryota

  • regenerate file

@ValWood
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ValWood commented Jul 14, 2023

Hi @pgaudet I'm stuck on this one.

I removed the 2 taxon constraints and checked in the file and did a pull request on the file.

I went to run the other thing that is needed, but I don't understand the instructions.
https://wiki.geneontology.org/Adding_Taxon_Restrictions

Can you advise? thanks

@ValWood
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ValWood commented Jul 17, 2023

Taxon constrains have disappeared for me
Will go ahead and obsolete

  • GO:0036212 contractile ring maintenance
  • GO:0032187 actomyosin contractile ring localization
  • GO:0032189 maintenance of actomyosin contractile ring localization

@ValWood
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ValWood commented Jul 17, 2023

I forgot

  • GO:1904789 regulation of mitotic actomyosin contractile ring maintenance
    but it is only used by PomBase for 2 annotations so I will obsolete it here.

@ValWood
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ValWood commented Jul 17, 2023

@ValWood ValWood changed the title Obsoletion request: GO:0036212 contractile ring maintenance Obsoletion request: GO:0036212 contractile ring localization Jul 17, 2023
@ValWood ValWood closed this as completed Jul 17, 2023
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