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Taxon constraint: biological process involved in interaction with host #27932

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Antonialock opened this issue May 21, 2024 · 3 comments
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@Antonialock
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Please provide as much information as you can:

  • GO term ID label:
    GO:0051701 biological process involved in interaction with host
  • Request to add a taxon constraint:

Never in vertebrates 7742
Never in arabidopsis

should get rid of 262 annotations https://www.ebi.ac.uk/QuickGO/annotations?goUsage=descendants&goUsageRelationships=is_a,part_of,occurs_in&goId=GO:0051701&taxonId=7742,3702&taxonUsage=descendants&evidenceCode=ECO:0000269&evidenceCodeUsage=descendants ?

Although is this correct?

for example
modulation by virus of host process GO:0019048 has taxon restrictions but still has annotations to the restricted taxons e.g.
https://www.ebi.ac.uk/QuickGO/annotations?goUsage=descendants&goUsageRelationships=is_a,part_of,occurs_in&goId=GO:0051701&taxonId=3702&taxonUsage=descendants&evidenceCode=ECO:0000269&evidenceCodeUsage=descendants

are these not filtered?

@ValWood
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ValWood commented Jul 24, 2024

I thought they were filtered too (at least from QuickGO?)
@pgaudet do you know how this works?

I can add the taxon constrict you request

@ValWood ValWood self-assigned this Jul 24, 2024
@pgaudet
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pgaudet commented Jul 26, 2024

I dont think there are taxon constraints yet - this still needs refactoring, because some host proteins are annotated to children of this term because there is no other term to which these can be annotated.

This is something to be discussed at a future multi org call - this is the large part of the refactoring that needs to be done.

@cmungall
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Vampire Venom: Vasodilatory Mechanisms of Vampire Bat (Desmodus rotundus) Blood Feeding

  • the CALCA gene in vampire bats induces vasodilation of resistance vessels such as mesenteric arteries partly via voltage-gated potassium channels and endothelium independent mechanisms, facilitating blood meal feeding by promoting continual blood flow. 🧛 🦇

@ValWood ValWood removed their assignment Oct 28, 2024
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