Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Would like phage proteins to be available #94

Closed
dsiegele opened this issue May 2, 2022 · 2 comments
Closed

Would like phage proteins to be available #94

dsiegele opened this issue May 2, 2022 · 2 comments

Comments

@dsiegele
Copy link

dsiegele commented May 2, 2022

Q1) I tried to create models for some phage pathways, but found very few phage proteins available in the Visual Pathway Editor. I was entering reviewed UniProt identifers. There were a few proteins from phages Qbeta and MS2, but apparently none for:
-Escherichia phage Lambda (Taxon 10710; 88 reviewed proteins)
-Enterobacteria phage T4 (Taxon 10665; 268 reviewed proteins)
-Enterobacteria phage N4 (Taxon 10752; 72 reviewed proteins)
-Escherichia phage P1 (Taxon 10678; 33 reviewed proteins)

Q2) Some of the phage proteins haven't been reviewed by UniProt. For those cases, can I request that a particular set of proteins be loaded?

Thank you!

@vanaukenk vanaukenk transferred this issue from geneontology/noctua-visual-pathway-editor May 3, 2022
@pgaudet
Copy link

pgaudet commented May 10, 2022

Hi @dsiegele

Do you have specific examples of reviewed UniProt entries that you cannot use? The entries I tested for some of these species worked.

Thanks, Pascale

@pgaudet
Copy link

pgaudet commented Jun 29, 2022

@dsiegele we have found a bug in the load, and have now loaded more entities. Please reopen if you still see issues with the proteins you want to annotate.

Thanks, Pascale

@pgaudet pgaudet closed this as completed Jun 29, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

3 participants