We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Many developers have written redundant obo parsers in various languages. Due to the details of the spec it is difficult to write a robust parser. OWL is very difficult to work with, many people use the wrong level of abstraction, e.g. XML parsing. obographs is designed with these developers in mind, see https://douroucouli.wordpress.com/2016/10/04/a-developer-friendly-json-exchange-format-for-ontologies/
This meta-ticket is for gathering feedback from knowledgeable bioinformatics coders who have struggled with obo or owl issues
The text was updated successfully, but these errors were encountered:
Many consumers such as @dvklopfenstein would like to see how GO looks in this representation.
This permanent URL should be active on monday: http://purl.obolibrary.org/obo/go/extensions/go-plus.json
The URL is intended to be permanent, but the underlying representation may change.
For an explanation of go-plus see http://geneontology.org/page/download-ontology
Sorry, something went wrong.
Another python parser and serializer for the list https://github.com/tgbugs/pyontutils/blob/master/pyontutils/obo_io.py.
No branches or pull requests
Many developers have written redundant obo parsers in various languages. Due to the details of the spec it is difficult to write a robust parser. OWL is very difficult to work with, many people use the wrong level of abstraction, e.g. XML parsing. obographs is designed with these developers in mind, see https://douroucouli.wordpress.com/2016/10/04/a-developer-friendly-json-exchange-format-for-ontologies/
This meta-ticket is for gathering feedback from knowledgeable bioinformatics coders who have struggled with obo or owl issues
Python
Perl
R
Ruby
Java
C
The text was updated successfully, but these errors were encountered: