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add keepalive api to keep repo active
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,84 +1,96 @@ | ||
| name: Build and publish pangolin docker image for master | ||
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| on: | ||
| schedule: | ||
| - cron: '0 0 * * *' | ||
| push: | ||
| schedule: | ||
| - cron: "0 0 * * *" | ||
| push: | ||
| branches: | ||
| - master | ||
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|
||
| jobs: | ||
| get-version: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Get current date | ||
| id: date | ||
| run: echo "::set-output name=date::$(date +'%Y-%m-%d')" | ||
| - name: Test with environment variables | ||
| run: echo $RELEASE_DATE | ||
| env: | ||
| RELEASE_DATE: ${{ steps.date.outputs.date }} | ||
| - name: Fetch pangolin version | ||
| shell: bash | ||
| run: | | ||
| ##Get pangolin-data version | ||
| curl -sL https://api.github.com/repos/cov-lineages/pangolin-data/releases/latest | \ | ||
| jq -r ".tag_name" > versions/pangolin-data-latest-version.txt | ||
| pangolin_data_VER=$(cat versions/pangolin-data-latest-version.txt) | ||
| echo $pangolin_data_VER | ||
| - uses: actions/checkout@v2 | ||
| - name: Get current date | ||
| id: date | ||
| run: echo "::set-output name=date::$(date +'%Y-%m-%d')" | ||
| - name: Test with environment variables | ||
| run: echo $RELEASE_DATE | ||
| env: | ||
| RELEASE_DATE: ${{ steps.date.outputs.date }} | ||
| - name: Fetch pangolin version | ||
| shell: bash | ||
| run: | | ||
| ##Get pangolin-data version | ||
| curl -sL https://api.github.com/repos/cov-lineages/pangolin-data/releases/latest | \ | ||
| jq -r ".tag_name" > versions/pangolin-data-latest-version.txt | ||
| pangolin_data_VER=$(cat versions/pangolin-data-latest-version.txt) | ||
| echo $pangolin_data_VER | ||
| ##Get constellations version | ||
| curl -sL https://api.github.com/repos/cov-lineages/constellations/releases/latest | \ | ||
| jq -r ".tag_name" > versions/constellations-latest-version.txt | ||
| constellations_VER=$(cat versions/constellations-latest-version.txt) | ||
| echo $constellations_VER | ||
| ##Get constellations version | ||
| curl -sL https://api.github.com/repos/cov-lineages/constellations/releases/latest | \ | ||
| jq -r ".tag_name" > versions/constellations-latest-version.txt | ||
| constellations_VER=$(cat versions/constellations-latest-version.txt) | ||
| echo $constellations_VER | ||
| ##Get pangolin version | ||
| curl -sL https://api.github.com/repos/cov-lineages/pangolin/releases/latest | \ | ||
| jq -r ".tag_name" > versions/pangolin-latest-version.txt | ||
| PANGOLIN_VER=$(cat versions/pangolin-latest-version.txt) | ||
| echo $PANGOLIN_VER | ||
| ##Get pangolin version | ||
| curl -sL https://api.github.com/repos/cov-lineages/pangolin/releases/latest | \ | ||
| jq -r ".tag_name" > versions/pangolin-latest-version.txt | ||
| PANGOLIN_VER=$(cat versions/pangolin-latest-version.txt) | ||
| echo $PANGOLIN_VER | ||
| ##Get scorpio version | ||
| curl -sL https://api.github.com/repos/cov-lineages/scorpio/releases/latest | \ | ||
| jq -r ".tag_name" > versions/scorpio-latest-version.txt | ||
| scorpio_VER=$(cat versions/scorpio-latest-version.txt) | ||
| echo $scorpio_VER | ||
| ##Get scorpio version | ||
| curl -sL https://api.github.com/repos/cov-lineages/scorpio/releases/latest | \ | ||
| jq -r ".tag_name" > versions/scorpio-latest-version.txt | ||
| scorpio_VER=$(cat versions/scorpio-latest-version.txt) | ||
| echo $scorpio_VER | ||
| - name: Check for modified files | ||
| id: git-check | ||
| run: echo ::set-output name=modified::$([ -z "`git status --porcelain`" ] && echo "false" || echo "true") | ||
|
|
||
| - name: Check for modified files | ||
| id: git-check | ||
| run: echo ::set-output name=modified::$([ -z "`git status --porcelain`" ] && echo "false" || echo "true") | ||
| - name: Login to Docker Hub | ||
| uses: docker/login-action@v1 | ||
| with: | ||
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | ||
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | ||
|
|
||
| - name: Login to Docker Hub | ||
| uses: docker/login-action@v1 | ||
| with: | ||
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | ||
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | ||
| - name: Set up Docker Buildx | ||
| id: buildx | ||
| uses: docker/setup-buildx-action@v1 | ||
|
|
||
| - name: Set up Docker Buildx | ||
| id: buildx | ||
| uses: docker/setup-buildx-action@v1 | ||
| - name: Build new docker image | ||
| shell: bash | ||
| run: | | ||
| echo ${{ steps.date.outputs.date }} | ||
| REPO_VER=$(cat versions/pangolin-latest-version.txt | sed 's|v||') | ||
| pangolin_data_VER=$(cat versions/pangolin-data-latest-version.txt | sed 's|v||') | ||
| scorpio_VER=$(cat versions/scorpio-latest-version.txt | sed 's|v||') | ||
| constellations_VER=$(cat versions/constellations-latest-version.txt | sed 's|v||') | ||
| #Build docker for pangolin-check for specific requirements | ||
| docker build --no-cache -f environments/pangolin/Dockerfile -t genomicmedicinesweden/gms-artic-pangolin:latest -t genomicmedicinesweden/gms-artic-pangolin:${{ steps.date.outputs.date }}-p-${REPO_VER}-d-${pangolin_data_VER}-c-${constellations_VER}-s-${scorpio_VER} --build-arg PANGOLIN_VER=v${REPO_VER} . | ||
| - name: Build new docker image | ||
| shell: bash | ||
| run: | | ||
| echo ${{ steps.date.outputs.date }} | ||
| REPO_VER=$(cat versions/pangolin-latest-version.txt | sed 's|v||') | ||
| pangolin_data_VER=$(cat versions/pangolin-data-latest-version.txt | sed 's|v||') | ||
| scorpio_VER=$(cat versions/scorpio-latest-version.txt | sed 's|v||') | ||
| constellations_VER=$(cat versions/constellations-latest-version.txt | sed 's|v||') | ||
| #Build docker for pangolin-check for specific requirements | ||
| docker build --no-cache -f environments/pangolin/Dockerfile -t genomicmedicinesweden/gms-artic-pangolin:latest -t genomicmedicinesweden/gms-artic-pangolin:${{ steps.date.outputs.date }}-p-${REPO_VER}-d-${pangolin_data_VER}-c-${constellations_VER}-s-${scorpio_VER} --build-arg PANGOLIN_VER=v${REPO_VER} . | ||
| - name: Push Docker image to DockerHub | ||
| shell: bash | ||
| run: | | ||
| REPO_VER=$(cat versions/pangolin-latest-version.txt | sed 's|v||') | ||
| pangolin_data_VER=$(cat versions/pangolin-data-latest-version.txt | sed 's|v||') | ||
| scorpio_VER=$(cat versions/scorpio-latest-version.txt | sed 's|v||') | ||
| constellations_VER=$(cat versions/constellations-latest-version.txt | sed 's|v||') | ||
| #Push to dockerhub for pangolin with specific requirements | ||
| docker image push genomicmedicinesweden/gms-artic-pangolin:latest | ||
| docker image push genomicmedicinesweden/gms-artic-pangolin:${{ steps.date.outputs.date }}-p-${REPO_VER}-d-${pangolin_data_VER}-c-${constellations_VER}-s-${scorpio_VER} | ||
| - name: Push Docker image to DockerHub | ||
| shell: bash | ||
| run: | | ||
| REPO_VER=$(cat versions/pangolin-latest-version.txt | sed 's|v||') | ||
| pangolin_data_VER=$(cat versions/pangolin-data-latest-version.txt | sed 's|v||') | ||
| scorpio_VER=$(cat versions/scorpio-latest-version.txt | sed 's|v||') | ||
| constellations_VER=$(cat versions/constellations-latest-version.txt | sed 's|v||') | ||
| #Push to dockerhub for pangolin with specific requirements | ||
| docker image push genomicmedicinesweden/gms-artic-pangolin:latest | ||
| docker image push genomicmedicinesweden/gms-artic-pangolin:${{ steps.date.outputs.date }}-p-${REPO_VER}-d-${pangolin_data_VER}-c-${constellations_VER}-s-${scorpio_VER} | ||
| keepalive-job: | ||
| name: Keepalive Workflow | ||
| if: ${{ always() }} | ||
| needs: get-version | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| actions: write | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: gautamkrishnar/keepalive-workflow@v2 | ||
| with: | ||
| use_api: false |
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