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Exome Slicer - Application to evaluate sequencing quality when designing an Exome Slice (NGS virtual panel)

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Exome Slicer

Evaluate quality of sequencing when developing an Exome Slice (NGS virtual panel)

  • Exomeslicer can be found here
  • Exomeslicer GraphQL API can be found here
  • Exomeslicer REST API can be found here
  • Exomeslicer REST API docs can be found here

If you use ExomeSlicer in your work, please cite our publication

Exome Slicer

Built with Cookiecutter Django Black code style
License:MIT

Settings

Moved to settings.

Basic Commands

Setting Up Your Users

  • To create a normal user account, just go to Sign Up and fill out the form. Once you submit it, you'll see a "Verify Your E-mail Address" page. Go to your console to see a simulated email verification message. Copy the link into your browser. Now the user's email should be verified and ready to go.

  • To create an superuser account, use this command:

    $ python manage.py createsuperuser
    

For convenience, you can keep your normal user logged in on Chrome and your superuser logged in on Firefox (or similar), so that you can see how the site behaves for both kinds of users.

Type checks

Running type checks with mypy:

$ mypy exome_slicer

Test coverage

To run the tests, check your test coverage, and generate an HTML coverage report:

$ coverage run -m pytest
$ coverage html
$ open htmlcov/index.html

Running tests with py.test

$ pytest

Live reloading and Sass CSS compilation

Moved to Live reloading and SASS compilation.

Sentry

Sentry is an error logging aggregator service. You can sign up for a free account at https://sentry.io/signup/?code=cookiecutter or download and host it yourself. The system is setup with reasonable defaults, including 404 logging and integration with the WSGI application.

You must set the DSN url in production.

Deployment

The following details how to deploy this application.