BRGEdata in a data-R package that includes a collection of BRGE omic and exposome data.
Data available in this R package:
| Data Type | Number of Samples | Number of Features | Technology | File Name | Object Name | Class |
|---|---|---|---|---|---|---|
| Exposome | 110 | 15 | brge_expo.rda |
brge_expo |
ExposomeSet |
|
| <<<<<<< HEAD | ||||||
| Transcriptome | 100 | 67528 | Affymetrix HTA 2.0 | brge_gexp.rda |
brge_gexp |
ExpressionSet |
| Methylome | 20 | 476946 | Illumina Human Methylation 450K | brge_methy.rda |
brge_methy |
GenomicRatioSet |
| ======= | ||||||
| Transcriptome | 75 | 67528 | Affymetrix HTA 2.0 | brge_gexp.rda |
brge_gexp |
ExpressionSet |
| Methylome | 115 | 476946 | Illumina Human Methylation 450K | brge_methy.rda |
brge_methy |
GenomicRatioSet |
upstream/master | Proteome | 90 | 47 | |
brge_prot.rda|brge_prot|ExpressionSet|
The phenotype data corresponding to the samples was included in each set:
- sex
- age
Moreover, the ExposomeSet includes:
- asthma status
- rhinitis status
The following table indicates the source of each class includeid in BRGdata data-R package:
| Class | Source |
|---|---|
ExposomeSet |
rexposome |
ExpressionSet |
Biobase |
GenomicRatioSet |
minfi |