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GlycoCoO

Glycoconjugate Ontology (GlycoCoO) is a standard ontology for glycoconjugate data (glycoprotein/glycolipid structures, publication information, biological source information, experimental data).

Current version of GlycoCoO

Ontology: https://github.com/glycoinfo/GlycoCoO/blob/master/ontology/glycocoo.owl

Versioning of this ontology

List of developers

A list of all developers and their institutions is available in the wiki (https://github.com/glycoinfo/GlycoCoO/wiki).

List of databases

An overview of all database providers generated GlycoCoO file is available in the wiki (https://github.com/glycoinfo/GlycoCoO/wiki).

List of prefix

Namespaces
gco: http://purl.jp/bio/12/glyco/conjugate#
glycan: http://purl.jp/bio/12/glyco/glycan#
faldo: http://biohackathon.org/resource/faldo#
sio: http://semanticscience.org/resource/
codao: http://purl.glycoinfo.org/ontology/codao#
uo: http://purl.obolibrary.org/obo/uo#
up: http://purl.uniprot.org/core/
skos: http://www.w3.org/2004/02/skos/core#
unicarbkb: http://purl.org/unicarbkb

Citation

  • The Glycoconjugate Ontology GlycoCoO for standardizing the annotation of glycoconjugate data and its application, Issaku Yamada, Matthew P Campbell, Nathan Edwards, Leyla Jael Castro, Frederique Lisacek, Julien Mariethoz, Tamiko Ono, Rene Ranzinger, Daisuke Shinmachi, Kiyoko F Aoki-Kinoshita, Glycobiology, 2021 Feb 23;cwab013, PMID: 33677548 DOI: 10.1093/glycob/cwab013

Funding

  • This work was supported in part by the National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency (JST), Glycoinformatics Consortium (GLIC), JSPS KAKENHI Grant Number JP16K00412, the Swiss Federal Government through the State Secretariat for Education, Research and Innovation (SERI), the Swiss National Science Foundation (grant number 31003A_179249), the Institute for Glycomics (Griffith University), Australian Research Data Commons, and NIH Common Fund Grant Number U01- GM125267-01. M. Campbell acknowledges the biocuration efforts of Robyn Peterson (Macquarie University, Sydney), Jodie Abrahams (Institute for Glycomics, Griffith University) and Rahi Navelkar (George Washington University).

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