pyannotables

Python package for conversions between Ensembl IDs and gene names (annotables + pyranges + Ensembl GTF files)

• Free software: Apache Software License 2.0

Installation

• pip install pyannotables

Features

Building data frames

See ./build.ipynb.

Changelog

• v0.5: Homology mapping table and function (homology_convert) are added. tables is a function now.
• v0.4: Entrez and UNIPROT IDs are added.
• v0.3: Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.

Credits

• annotables package in R https://github.com/stephenturner/annotables
• audreyr/cookiecutter-pypackage: https://github.com/audreyr/cookiecutter-pypackage