chore: bump @GMOD dependencies and generic-filehandle (#849)

* chore: bump @GMOD dependencies and generic-filehandle * fix: broken bbi
gosling-lang · Apr 17, 2023 · 1c62919 · 1c62919
1 parent a1977b9
commit 1c62919
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Showing 4 changed files with 373 additions and 354 deletions.
diff --git a/package.json b/package.json
@@ -47,10 +47,10 @@
     },
     "sideEffect": false,
     "dependencies": {
-        "@gmod/bam": "^1.1.8",
-        "@gmod/bbi": "^1.0.30",
-        "@gmod/tabix": "^1.5.3",
-        "@gmod/vcf": "^5.0.6",
+        "@gmod/bam": "^1.1.18",
+        "@gmod/bbi": "^3.0.0",
+        "@gmod/tabix": "^1.5.6",
+        "@gmod/vcf": "^5.0.10",
         "@types/bezier-js": "^4.1.0",
         "@types/d3": "^7.0.0",
         "@types/lodash": "^4.14.151",
@@ -67,7 +67,7 @@
         "d3-scale-chromatic": "^2.0.0",
         "d3-shape": "^2.0.0",
         "fflate": "^0.7.1",
-        "generic-filehandle": "2.2.1",
+        "generic-filehandle": "^3.0.1",
         "gosling-theme": "^0.0.10",
         "higlass": "~1.11.8",
         "higlass-register": "^0.3.0",
@@ -139,8 +139,7 @@
         "vitest": "^0.10.0"
     },
     "resolutions": {
-        "slugid": "^3.0.0",
-        "generic-filehandle": "2.2.1"
+        "slugid": "^3.0.0"
     },
     "browserslist": {
         "production": [

diff --git a/src/data-fetchers/bigwig/bigwig-data-fetcher.ts b/src/data-fetchers/bigwig/bigwig-data-fetcher.ts
@@ -86,7 +86,7 @@ function BigWigDataFetcher(HGC: import('@higlass/types').HGC, dataConfig: BigWig
             this.dataPromises.push(this.loadBBI(dataConfig));
         }
 
-        loadBBI(dataConfig: { url: string }) {
+        async loadBBI(dataConfig: { url: string }) {
             if (dataConfig.url) {
                 this.bwFile = new BigWig({
                     filehandle: new RemoteFile(dataConfig.url)

diff --git a/vite.config.js b/vite.config.js
@@ -81,7 +81,12 @@ const esm = defineConfig({
         rollupOptions: { external }
     },
     resolve: { alias },
-    plugins: [manualInlineWorker]
+    plugins: [manualInlineWorker],
+    optimizeDeps: {
+        esbuildOptions: {
+            inject: ['./src/alias/buffer-shim.js']
+        }
+    }
 });
 
 const dev = defineConfig({
@@ -91,7 +96,12 @@ const dev = defineConfig({
         'process.platform': 'undefined',
         'process.env.THREADS_WORKER_INIT_TIMEOUT': 'undefined'
     },
-    plugins: [bundleWebWorker, manualInlineWorker]
+    plugins: [bundleWebWorker, manualInlineWorker],
+    optimizeDeps: {
+        esbuildOptions: {
+            inject: ['./src/alias/buffer-shim.js']
+        }
+    }
 });
 
 const testing = defineConfig({
@@ -112,6 +122,11 @@ const testing = defineConfig({
           include: ['src', 'editor'],
         }
     },
+    optimizeDeps: {
+        esbuildOptions: {
+            inject: ['./src/alias/buffer-shim.js']
+        }
+    }
 });
 
 export default ({ command, mode }) => {