Python package for identifying Genetic iNTeractions from combinatorial screening data.
- Free software: MIT license
- Documentation: https://gnt.readthedocs.io.
To install:
$ pip install gnt
$ gnt "https://raw.githubusercontent.com/PeterDeWeirdt/bigpapi/master/data/processed/bigpapi_lfcs.csv" example_output --control CD81 --control "HPRT intron"
import gnt
import pandas as pd
lfcs = pd.read_csv('https://raw.githubusercontent.com/PeterDeWeirdt/bigpapi/master/data/processed/bigpapi_lfcs.csv')
guide_residuals, model_info = gnt.get_guide_residuals(lfcs, ['CD81', 'HPRT intron'], scale=True)
gene_scores = gnt.get_gene_residuals(guide_residuals, 'scaled_residual_z')
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.