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metadata.yaml
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metadata.yaml
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---
title: "Hetnet connectivity search provides rapid insights into how two biomedical entities are related"
date: "2023-07-28"
keywords:
- hetnets
- networks
- connectivity
- search
- hetionet
- knowledge graphs
- algorithms
- nodes
- bioinformatics
- biomedical informatics
- path counts
- matrix multiplication
- DWPC
lang: en-US
thumbnail: https://github.com/hetio/het.io/raw/e1ca4fd591e0aa01a3767bbf5597a910528f6f86/explore/connectivity-search.png
authors:
- github: dhimmel
name: Daniel S. Himmelstein
initials: DSH
orcid: 0000-0002-3012-7446
twitter: dhimmel
email: daniel.himmelstein@gmail.com
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
- Related Sciences, Denver, CO 80202, USA
funders:
- The Gordon and Betty Moore Foundation (GBMF4552)
- Pfizer Worldwide Research, Development, and Medical
roles:
- Conceptualization
- Data curation
- Formal analysis
- Funding acquisition
- Investigation
- Methodology
- Project administration
- Resources
- Software
- Supervision
- Visualization
- Writing – original draft
- Writing – review & editing
- github: zietzm
name: Michael Zietz
initials: MZ
orcid: 0000-0003-0539-630X
twitter: ZietzMichael
email: michael.zietz@gmail.com
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA
roles:
- Conceptualization
- Data curation
- Formal analysis
- Investigation
- Methodology
- Software
- Visualization
- Writing – original draft
- Writing – review & editing
- github: vincerubinetti
name: Vincent Rubinetti
initials: VR
orcid: 0000-0002-4655-3773
email: vince.rubinetti@gmail.com
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
- Center for Health AI, University of Colorado School of Medicine, Aurora, CO 80045, USA
roles:
- Data curation
- Methodology
- Software
- Visualization
- Writing – original draft
- Writing – review & editing
- github: kkloste
name: Kyle Kloster
initials: KK
orcid: 0000-0001-5678-7197
twitter: kylekloster
email: kyle.kloster@gmail.com
affiliations:
- Carbon, Inc., Redwood City, CA 94063, USA
- Department of Computer Science, North Carolina State University, Raleigh, NC 27606, USA
funders:
- The Gordon and Betty Moore Foundation (GBMF4560)
roles:
- Conceptualization
- Formal analysis
- Methodology
- github: ben-heil
name: Benjamin J. Heil
initials: BJH
orcid: 0000-0002-2811-1031
twitter: autobencoder
email: benheil@pennmedicine.upenn.edu
affiliations:
- Genomics and Computational Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
funders:
- The Gordon and Betty Moore Foundation (GBMF4552)
roles:
- Formal analysis
- Investigation
- Methodology
- Software
- Validation
- github: falquaddoomi
name: Faisal Alquaddoomi
initials: FSA
orcid: 0000-0003-4297-8747
email: faisal.alquaddoomi@cuanschutz.edu
affiliations:
- Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA
- Center for Health AI, University of Colorado School of Medicine, Aurora, CO 80045, USA
roles:
- Resources
- Software
- github: dongbohu
name: Dongbo Hu
initials: DH
orcid: 0000-0001-7870-8242
twitter: null
email: dongbo.hu@gmail.com
affiliations:
- Department of Pathology, Perelman School of Medicine University of Pennsylvania, Philadelphia, PA 19104, USA
funders:
- The Gordon and Betty Moore Foundation (GBMF4552)
roles:
- Resources
- Software
- Writing – review & editing
- github: danich1
name: David N. Nicholson
initials: DNN
orcid: 0000-0003-0002-5761
twitter: null
email: dnicholson329@gmail.com
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
funders:
- The Gordon and Betty Moore Foundation (GBMF4552)
- The National Institutes of Health (T32 HG000046)
roles:
- Data curation
- Writing – original draft
- github: yhao-compbio
name: Yun Hao
initials: YH
orcid: 0000-0002-1684-0085
twitter: YhaoC
email: yun.hao@pennmedicine.upenn.edu
affiliations:
- Genomics and Computational Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
roles:
- Investigation
- Visualization
- github: bdsullivan
name: Blair D. Sullivan
initials: BDS
orcid: 0000-0001-7720-6208
twitter: BlairDSullivan
email: sullivan@cs.utah.edu
affiliations:
- School of Computing, University of Utah, Salt Lake City, UT 84112, USA
roles:
- Conceptualization
- Funding acquisition
- Supervision
- Writing – review & editing
- github: naglem
name: Michael W. Nagle
initials: MWN
orcid: 0000-0002-4677-7582
twitter: mikenagle84
email: mike_nagle@eisai.com
affiliations:
- Integrative Biology, Internal Medicine Research Unit, Worldwide Research, Development, and Medicine, Pfizer Inc., Cambridge, MA 02139, USA
- Human Biology Integration Foundation, Deep Human Biology Learning, Eisai Inc., Cambridge, MA 02140, USA
roles:
- Investigation
- Resources
- github: cgreene
name: Casey S. Greene
initials: CSG
orcid: 0000-0001-8713-9213
twitter: GreeneScientist
email: casey.s.greene@cuanschutz.edu
funders:
- the National Human Genome Research Institute (R01 HG010067)
- the National Cancer Institute (R01 CA237170)
- the Gordon and Betty Moore Foundation (GBMF 4552)
- Pfizer Worldwide Research, Development, and Medical
- the Eunice Kennedy Shriver National Institute of Child Health and Human Development (R01 HD109765)
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA
- Center for Health AI, University of Colorado School of Medicine, Aurora, CO 80045, USA
roles:
- Conceptualization
- Funding acquisition
- Investigation
- Methodology
- Project administration
- Resources
- Supervision
- Writing – original draft
- Writing – review & editing
corresponding: true
pandoc:
manubot-fail-on-errors: True