Upgrade to version 2.0.6

griffithlab · Jan 18, 2022 · 6e43147 · 6e43147
1 parent 02dd9d4
commit 6e43147
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Showing 6 changed files with 15 additions and 12 deletions.
diff --git a/.gitignore b/.gitignore
@@ -20,3 +20,5 @@ nytprof.out
 *.bs
 /_eumm/
 __pycache__
+.DS_Store
+docs/.DS_Store
diff --git a/docs/.DS_Store b/docs/.DS_Store
diff --git a/docs/conf.py b/docs/conf.py
@@ -69,7 +69,7 @@
 # The short X.Y version.
 version = '2.0'
 # The full version, including alpha/beta/rc tags.
-release = '2.0.5'
+release = '2.0.6'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/docs/index.rst b/docs/index.rst
@@ -54,16 +54,9 @@ New in release |release|
 
 This is a bugfix release. It fixes the following problem(s):
 
-- Some users have reported "Cannot open file" errors when running
-  NetMHCstabpan. This release adds a retry when this error in encountered.
-- This release adds stricter checking to pVACbind for unsupported amino acids.
-  Sequences containing an unsupported amino acid will be skipped. The
-  following amino acids are supported: ``A``, ``R``, ``N``, ``D``, ``C``, ``E``,
-  ``Q``, ``G``, ``H``, ``I``, ``L``, ``K``, ``M``, ``F``, ``P``, ``S``, ``T``,
-  ``W``, ``Y``, ``V``.
-- Some VEP predictions for supported variant types might not contain any
-  protein position information, rendering pVACseq unable to parse such
-  annotations. Annotations without protein position information will now be skipped.
+- When running pVAcseq with a proximal variants VCF, proximal DNPs affecting
+  multiple amino acids were not handled correctly and would result in an error.
+  This issue has now been fixed.
 
 New in version |version|
 ------------------------

diff --git a/docs/releases/2_0.rst b/docs/releases/2_0.rst
@@ -160,3 +160,11 @@ This is a bugfix release. It fixes the following problem(s):
   protein position information, rendering pVACseq unable to parse such
   annotations. Annotations without protein position information will now be skipped.
 
+Version 2.0.6
+-------------
+
+This is a bugfix release. It fixes the following problem(s):
+
+- When running pVAcseq with a proximal variants VCF, proximal DNPs affecting
+  multiple amino acids were not handled correctly and would result in an error.
+  This issue has now been fixed.
diff --git a/setup.py b/setup.py
@@ -61,7 +61,7 @@
 
 setup(
     name="pvactools",
-    version="2.0.5",
+    version="2.0.6",
     packages=[
         "tools",
         "tools.pvacbind",