Sort alleles for output

griffithlab · Feb 23, 2022 · 9d1ab77 · 9d1ab77
1 parent e281a77
commit 9d1ab77
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pvactools/lib/aggregate_all_epitopes.py b/pvactools/lib/aggregate_all_epitopes.py
@@ -398,7 +398,7 @@ def assemble_result_line(self, best, key, vaf_clonal, hla, anno_count, peptide_c
         tier = self.get_tier(mutation=best, vaf_clonal=vaf_clonal)
 
         out_dict = { 'ID': key }
-        out_dict.update({ k.replace('HLA-', ''):v for k,v in hla.items() })
+        out_dict.update({ k.replace('HLA-', ''):v for k,v in sorted(hla.items()) })
         out_dict.update({
             'Gene': best["Gene Name"],
             'AA Change': self.get_best_aa_change(best),
@@ -519,7 +519,7 @@ def assemble_result_line(self, best, key, vaf_clonal, hla, anno_count, peptide_c
         tier = self.get_tier(mutation=best, vaf_clonal=vaf_clonal)
 
         out_dict = { 'ID': key }
-        out_dict.update({ k.replace('HLA-', ''):v for k,v in hla.items() })
+        out_dict.update({ k.replace('HLA-', ''):v for k,v in sorted(hla.items()) })
         if 'Gene Name' in best:
             gene = best['Gene Name']
         else: