Upgrade to version 1.5.7

griffithlab · Mar 17, 2020 · cb8b9bc · cb8b9bc
1 parent 76d28d0
commit cb8b9bc
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Showing 4 changed files with 18 additions and 8 deletions.
diff --git a/docs/conf.py b/docs/conf.py
@@ -69,7 +69,7 @@
 # The short X.Y version.
 version = '1.5'
 # The full version, including alpha/beta/rc tags.
-release = '1.5.6'
+release = '1.5.7'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/docs/index.rst b/docs/index.rst
@@ -52,12 +52,10 @@ New in release |release|
 
 This is a hotfix release. It fixes the following issues:
 
-- The ``pvacbind run`` command would previously error out if one of the input
-  sequences would contain a X stop codon. This update will remove the X amino
-  acid and the downstream sequence before further processing the remaining
-  protein sequence.
-- A bug in the ``pvacfuse top_score_filter`` code would previsouly result
-  in an error when trying to run this command. This has now been fixed.
+- The ``pvacbind run`` command would previously allow fasta input files with
+  duplicated headers. However, it would silently skip subsequent entries with
+  duplicated headers even if the fasta sequence was novel. With this release
+  pVACbind will now error out if a duplicate fasta header is encounterd.
 
 New in version |version|
 ------------------------

diff --git a/docs/releases/1_5.rst b/docs/releases/1_5.rst
@@ -156,9 +156,21 @@ This is a hotfix release. It fixes the following issues:
 1.5.6
 -----
 
+This is a hotfix release. It fixes the following issues:
+
 - The ``pvacbind run`` command would previously error out if one of the input
   sequences would contain a X stop codon. This update will remove the X amino
   acid and the downstream sequence before further processing the remaining
   protein sequence.
 - A bug in the ``pvacfuse top_score_filter`` code would previsouly result
   in an error when trying to run this command. This has now been fixed.
+
+1.5.7
+-----
+
+This is a hotfix release. It fixes the following issues:
+
+- The ``pvacbind run`` command would previously allow fasta input files with
+  duplicated headers. However, it would silently skip subsequent entries with
+  duplicated headers even if the fasta sequence was novel. With this release
+  pVACbind will now error out if a duplicate fasta header is encounterd.
diff --git a/setup.py b/setup.py
@@ -61,7 +61,7 @@
 
 setup(
     name="pvactools",
-    version="1.5.6",
+    version="1.5.7",
     packages=[
         "tools",
         "tools.pvacbind",