Merge c1ba9b8 into 04cbc3f

griffithlab · Aug 18, 2020 · d32562b · d32562b
2 parents 04cbc3f + c1ba9b8
commit d32562b
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Showing 5 changed files with 6,867 additions and 3 deletions.
diff --git a/lib/output_parser.py b/lib/output_parser.py
@@ -65,13 +65,17 @@ def find_mutation_position(self, wt_epitope_seq, mt_epitope_seq):
 
     def get_percentile(self, line):
         if 'percentile' in line:
-            return float(line['percentile'])
+            percentile = line['percentile']
         elif 'percentile_rank' in line:
-            return float(line['percentile_rank'])
+            percentile = line['percentile_rank']
         elif 'rank' in line:
-            return float(line['rank'])
+            percentile = line['rank']
         else:
             return 'NA'
+        if percentile == 'None':
+            return 'NA'
+        else:
+            return float(percentile)
 
     def match_wildtype_and_mutant_entry_for_missense(self, result, mt_position, wt_results, previous_result):
         #The WT epitope at the same position is the match