Abbreviations

Alex H. Wagner, PhD edited this page Nov 13, 2017 · 11 revisions

7-ii. Abbreviations

  • AWS EC2: Amazon Web Services, Elastic Compute
  • BAM: Binary Sequence Alignment/Map
  • BED: Browser Extensible Data
  • CIGAR: Compact Idiosyncratic Gapped Alignment Report
  • DNA: Deoxyribonucleic Acid
  • FPKM: Fragments Per Kilobase Of Exon Per Million Fragments Mapped
  • FPM: Fragments Per Million Fragments Mapped
  • GFF: Generic Feature Format
  • GTF: Gene Transfer Format
  • IGB: Integrated Genome Browser
  • IGV: Integrative Genome Viewer
  • PCA: Principal Component Analysis
  • polyA: Polyadenylation
  • QC: Quality Control
  • qPCR: Quantitative Polymerase Chain Reaction
  • RNA: Ribonucleic acid
  • RPKM: Reads Per Kilobase Of Exon Per Million Fragments Mapped
  • RPM: Reads Per Million Fragments Mapped
  • RT-PCR: Reverse Transcription Polymerase Chain Reaction
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